Index

_

__getattr__() (tyto.Ontology method) (tyto.tyto.Ontology method) __getitem__() (tyto.Ontology method) (tyto.tyto.Ontology method) _get_request() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.RESTEndpoint method) (tyto.endpoint.RESTEndpoint method) _handler() (tyto.Ontology method) (tyto.tyto.Ontology method) _load_ontology_ids() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) _reverse_sanitize_term (in module tyto.om) _reverse_sanitize_term() (tyto.Ontology method) (tyto.tyto.Ontology method)

_reverse_sanitize_uri (in module tyto.ncbi_taxon) (in module tyto.ncit) (in module tyto.sbo) (in module tyto.so) _reverse_sanitize_uri() (tyto.Ontology method) (tyto.tyto.Ontology method) _sanitize_term (in module tyto.om) (in module tyto.so) _sanitize_term() (tyto.Ontology method) (tyto.tyto.Ontology method) _sanitize_uri (in module tyto.ncbi_taxon) (in module tyto.ncit) (in module tyto.sbo) (in module tyto.so) _sanitize_uri() (tyto.Ontology method) (tyto.tyto.Ontology method)

C

configure_cache_size() (in module tyto) (in module tyto.tyto) convert() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.GraphEndpoint method) (tyto.endpoint.endpoint.SPARQLEndpoint method) (tyto.endpoint.GraphEndpoint method) (tyto.endpoint.SPARQLEndpoint method)

E

EBIOntologyLookupService (in module tyto) (in module tyto.endpoint) (in module tyto.endpoint.endpoint)

EBIOntologyLookupServiceAPI (class in tyto.endpoint) (class in tyto.endpoint.endpoint) Endpoint (class in tyto.endpoint) (class in tyto.endpoint.endpoint)

G

get_ancestors() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.tyto.URI method) (tyto.URI method) get_children() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.tyto.URI method) (tyto.URI method) get_descendants() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.tyto.URI method) (tyto.URI method) get_ontologies() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.SPARQLBuilder method) (tyto.endpoint.SPARQLBuilder method) get_parents() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.tyto.URI method) (tyto.URI method)

get_term_by_uri() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.QueryBackend method) (tyto.endpoint.endpoint.SPARQLBuilder method) (tyto.endpoint.QueryBackend method) (tyto.endpoint.SPARQLBuilder method) (tyto.Ontology method) (tyto.tyto.Ontology method) get_uri_by_term() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.QueryBackend method) (tyto.endpoint.endpoint.SPARQLBuilder method) (tyto.endpoint.QueryBackend method) (tyto.endpoint.SPARQLBuilder method) (tyto.Ontology method) (tyto.tyto.Ontology method) GraphEndpoint (class in tyto.endpoint) (class in tyto.endpoint.endpoint)

I

installation_path() (in module tyto.tyto) is_a() (tyto.tyto.URI method) (tyto.URI method) is_ancestor_of() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.SPARQLBuilder method) (tyto.endpoint.SPARQLBuilder method) (tyto.tyto.URI method) (tyto.URI method) is_child_of() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.SPARQLBuilder method) (tyto.endpoint.SPARQLBuilder method) (tyto.tyto.URI method) (tyto.URI method) is_descendant_of() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.SPARQLBuilder method) (tyto.endpoint.SPARQLBuilder method) (tyto.tyto.URI method) (tyto.URI method)

is_loaded() (tyto.endpoint.endpoint.GraphEndpoint method) (tyto.endpoint.GraphEndpoint method) is_parent_of() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.SPARQLBuilder method) (tyto.endpoint.SPARQLBuilder method) (tyto.tyto.URI method) (tyto.URI method) is_subtype_of() (tyto.tyto.URI method) (tyto.URI method) is_supertype_of() (tyto.tyto.URI method) (tyto.URI method)

L

load() (tyto.endpoint.endpoint.GraphEndpoint method) (tyto.endpoint.GraphEndpoint method)

LOGGER (in module tyto.tyto)

M

module tyto tyto.endpoint tyto.endpoint.endpoint tyto.ncbi_taxon tyto.ncit tyto.om tyto.sbo tyto.so tyto.tyto

multi_replace() (in module tyto.tyto)

N

NCBITaxon (in module tyto) (in module tyto.ncbi_taxon)

NCIT (in module tyto) (in module tyto.ncit)

O

OM (in module tyto) (in module tyto.om) Ontobee (in module tyto) (in module tyto.endpoint) (in module tyto.endpoint.endpoint)

OntobeeEndpoint (class in tyto.endpoint) (class in tyto.endpoint.endpoint) Ontology (class in tyto) (class in tyto.tyto)

Q

query() (tyto.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method) (tyto.endpoint.endpoint.GraphEndpoint method) (tyto.endpoint.endpoint.OntobeeEndpoint method) (tyto.endpoint.endpoint.SPARQLEndpoint method) (tyto.endpoint.GraphEndpoint method) (tyto.endpoint.OntobeeEndpoint method) (tyto.endpoint.SPARQLEndpoint method)

QueryBackend (class in tyto.endpoint) (class in tyto.endpoint.endpoint)

R

RESTEndpoint (class in tyto.endpoint) (class in tyto.endpoint.endpoint)

S

SBO (in module tyto) (in module tyto.sbo) SO (in module tyto) (in module tyto.so)

SPARQLBuilder (class in tyto.endpoint) (class in tyto.endpoint.endpoint) SPARQLEndpoint (class in tyto.endpoint) (class in tyto.endpoint.endpoint)

T

tyto module tyto.endpoint module tyto.endpoint.endpoint module tyto.ncbi_taxon module tyto.ncit module

tyto.om module tyto.sbo module tyto.so module tyto.tyto module

U

URI (class in tyto) (class in tyto.tyto)