Take Your Terms from Ontologies (tyto)
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API Reference
Take Your Terms from Ontologies (tyto)
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__getattr__() (tyto.Ontology method)
(tyto.tyto.Ontology method)
__getitem__() (tyto.Ontology method)
(tyto.tyto.Ontology method)
__repr__() (tyto.tyto.Term method)
_get_request() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.RESTEndpoint method)
(tyto.endpoint.RESTEndpoint method)
_handler() (tyto.Ontology method)
(tyto.tyto.Ontology method)
_load_ontology_ids() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
_reverse_sanitize_term (in module tyto.om)
_reverse_sanitize_term() (tyto.Ontology method)
(tyto.tyto.Ontology method)
_reverse_sanitize_uri (in module tyto.ncbi_taxon)
(in module tyto.ncit)
(in module tyto.sbo)
(in module tyto.so)
_reverse_sanitize_uri() (tyto.Ontology method)
(tyto.tyto.Ontology method)
_sanitize_term (in module tyto.om)
(in module tyto.so)
_sanitize_term() (tyto.Ontology method)
(tyto.tyto.Ontology method)
_sanitize_uri (in module tyto.ncbi_taxon)
(in module tyto.ncit)
(in module tyto.sbo)
(in module tyto.so)
_sanitize_uri() (tyto.Ontology method)
(tyto.tyto.Ontology method)
A
App
module
C
configure_cache_size() (in module tyto)
(in module tyto.tyto)
convert() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.GraphEndpoint method)
(tyto.endpoint.endpoint.SPARQLEndpoint method)
(tyto.endpoint.GraphEndpoint method)
(tyto.endpoint.SPARQLEndpoint method)
E
EBIOntologyLookupService (in module tyto)
(in module tyto.endpoint)
(in module tyto.endpoint.endpoint)
EBIOntologyLookupServiceAPI (class in tyto.endpoint)
(class in tyto.endpoint.endpoint)
EDAM (in module tyto)
(in module tyto.edam)
Endpoint (class in tyto.endpoint)
(class in tyto.endpoint.endpoint)
G
get_ancestors() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.tyto.URI method)
(tyto.URI method)
get_children() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.tyto.URI method)
(tyto.URI method)
get_descendants() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.tyto.URI method)
(tyto.URI method)
get_ontologies() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.SPARQLBuilder method)
(tyto.endpoint.SPARQLBuilder method)
get_parents() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.tyto.URI method)
(tyto.URI method)
get_term_by_uri() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.PUG_REST method)
(tyto.endpoint.endpoint.QueryBackend method)
(tyto.endpoint.endpoint.SPARQLBuilder method)
(tyto.endpoint.PUG_REST method)
(tyto.endpoint.QueryBackend method)
(tyto.endpoint.SPARQLBuilder method)
(tyto.Ontology method)
(tyto.tyto.Ontology method)
get_uri_by_term() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.PUG_REST method)
(tyto.endpoint.endpoint.QueryBackend method)
(tyto.endpoint.endpoint.SPARQLBuilder method)
(tyto.endpoint.PUG_REST method)
(tyto.endpoint.QueryBackend method)
(tyto.endpoint.SPARQLBuilder method)
(tyto.Ontology method)
(tyto.tyto.Ontology method)
GraphEndpoint (class in tyto.endpoint)
(class in tyto.endpoint.endpoint)
I
Identified (class in App)
installation_path() (in module tyto.tyto)
is_a() (tyto.tyto.URI method)
(tyto.URI method)
is_ancestor_of() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.SPARQLBuilder method)
(tyto.endpoint.SPARQLBuilder method)
(tyto.tyto.URI method)
(tyto.URI method)
is_child_of() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.SPARQLBuilder method)
(tyto.endpoint.SPARQLBuilder method)
(tyto.tyto.URI method)
(tyto.URI method)
is_descendant_of() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.SPARQLBuilder method)
(tyto.endpoint.SPARQLBuilder method)
(tyto.tyto.URI method)
(tyto.URI method)
is_loaded() (tyto.endpoint.endpoint.GraphEndpoint method)
(tyto.endpoint.GraphEndpoint method)
is_parent_of() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.SPARQLBuilder method)
(tyto.endpoint.SPARQLBuilder method)
(tyto.tyto.URI method)
(tyto.URI method)
is_subtype_of() (tyto.tyto.URI method)
(tyto.URI method)
is_supertype_of() (tyto.tyto.URI method)
(tyto.URI method)
L
label (App.Identified attribute)
(App.Measure attribute)
load() (tyto.endpoint.endpoint.GraphEndpoint method)
(tyto.endpoint.GraphEndpoint method)
LOGGER (in module tyto.tyto)
M
Measure (class in App)
module
App
tyto
tyto.edam
tyto.endpoint
tyto.endpoint.endpoint
tyto.ncbi_taxon
tyto.ncit
tyto.om
tyto.pubchem
tyto.sbo
tyto.sbol2
tyto.sbol3
tyto.so
tyto.tyto
multi_replace() (in module tyto.tyto)
N
NCBITaxon (in module tyto)
(in module tyto.ncbi_taxon)
NCIT (in module tyto)
(in module tyto.ncit)
O
om (in module App)
OM (in module tyto)
(in module tyto.om)
Ontobee (in module tyto)
(in module tyto.endpoint)
(in module tyto.endpoint.endpoint)
OntobeeEndpoint (class in tyto.endpoint)
(class in tyto.endpoint.endpoint)
Ontology (class in tyto)
(class in tyto.tyto)
P
prov (in module App)
PubChem (in module tyto)
(in module tyto.pubchem)
PubChemAPI (in module tyto)
(in module tyto.endpoint)
(in module tyto.endpoint.endpoint)
PUG_REST (class in tyto.endpoint)
(class in tyto.endpoint.endpoint)
Q
query() (tyto.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.EBIOntologyLookupServiceAPI method)
(tyto.endpoint.endpoint.GraphEndpoint method)
(tyto.endpoint.endpoint.OntobeeEndpoint method)
(tyto.endpoint.endpoint.SPARQLEndpoint method)
(tyto.endpoint.GraphEndpoint method)
(tyto.endpoint.OntobeeEndpoint method)
(tyto.endpoint.SPARQLEndpoint method)
QueryBackend (class in tyto.endpoint)
(class in tyto.endpoint.endpoint)
R
RESTEndpoint (class in tyto.endpoint)
(class in tyto.endpoint.endpoint)
S
SBO (in module tyto)
(in module tyto.sbo)
SBOL2 (in module tyto)
(in module tyto.sbol2)
sbol3 (in module App)
SBOL3 (in module tyto)
(in module tyto.sbol3)
SO (in module tyto)
(in module tyto.so)
SPARQLBuilder (class in tyto.endpoint)
(class in tyto.endpoint.endpoint)
SPARQLEndpoint (class in tyto.endpoint)
(class in tyto.endpoint.endpoint)
T
Term (class in tyto.tyto)
tyto
module
tyto.edam
module
tyto.endpoint
module
tyto.endpoint.endpoint
module
tyto.ncbi_taxon
module
tyto.ncit
module
tyto.om
module
tyto.pubchem
module
tyto.sbo
module
tyto.sbol2
module
tyto.sbol3
module
tyto.so
module
tyto.tyto
module
U
URI (class in tyto)
(class in tyto.tyto)
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